FAQ

How do I install STRmie-HD quickly?
Use:

git clone https://github.com/mazzalab/STRmie-HD.git
cd STRmie-HD
conda env create -f STRmie.yml
conda activate STRmie
pip install -e .

What are the available operating modes?
See Operational Modes for the difference between Complete_Pipeline and Index_Calculation.

Which input file types are supported?
See Input file types for details on FASTQ/FASTA support and data quality notes.