Installation

Clone the repository:

git clone https://github.com/mazzalab/STRmie-HD.git
cd STRmie-HD

Create the conda environment:

conda env create -f STRmie.yml

Activate the environment:

conda activate STRmie

Install the package:

pip install -e .

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Help

strmie --help

Automated Testing with Pytest

The project includes a test suite that validates the core functionalities of both operational modes using example input and expected output files.
This ensures the tool works as intended after installation or modification.

Run tests with:

pytest tests/test_strmie.py

What it tests: Executes the full pipeline and compares the output Excel with the expected report.