STRmie-HD
  • Installation
  • Input file types
  • Operational Modes
    • Complete Pipeline
    • Index Calculation
  • Command-line Usage
    • 🔹 1. Complete Pipeline
    • 🔹 2. Index Calculation Only
    • Command-line parameters
  • Case Studies
    • Case Study 1 – Paired-End Reads (PE) with PEAR
    • Case Study 2 – Single-End Reads (SE)
    • Running the Complete Pipeline (applies to both PE-merged and SE)
    • Running the Index Calculation
  • Outputs
    • Generated Output Files
    • HTML report Step by Step workflow
    • Generate a table for recalculating indices (Index_Calculation mode)
  • FAQ
STRmie-HD
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